Scaffold Ga0208091_1000168

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000168
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14931
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005088	Metagenome / Metatranscriptome	412	Y
F007027	Metagenome	359	Y
F012572	Metagenome	279	N
F046904	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100016819	F046904	AGG	MNSLDLIVVGMVCLFMGLFIYAAYEMGYKVGLGEGYLRGRNIAKALRESEAAK
Ga0208091_100016821	F012572	AGG	MRASLVYANLYRLGASGMSSQMELINLKAMTGKLFIDGEMVAEYKVETCDKCARVTQLDKFGYQKNSYENIIWFCKDCR
Ga0208091_100016823	F007027	GAG	MDIIRFECRSCKKITDQLERIVSDNLPPNVKVLQCIKCSKMSVCLLVDYADV
Ga0208091_10001689	F005088	AGGA	VGRGSFGYLVAQLAVETGIPPQYLLDLDAHMFKNMLKVLTDKAKEQQNANRGNRR