Scaffold Ga0208091_1000138

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000138
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16603
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (9.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005879	Metagenome / Metatranscriptome	387	Y
F006303	Metagenome / Metatranscriptome	376	Y
F014132	Metagenome / Metatranscriptome	265	Y
F025026	Metagenome / Metatranscriptome	203	Y
F031494	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100013815	F006303	N/A	MLNWIKNKLIPPYKLNPKEQLILDIITHLCSHPETDIKMAPLSGRYFLVNKRLEYWVRLWEDGVTITNHRFTFTHMSPQSYQSKVIKIVENAIEKSRDEFEQAVFQNEVELLETISNDITNSKV
Ga0208091_100013817	F014132	N/A	MNDQIEINKEQLYKLYMEWVNQVSEELDWKTHFGPEEIVYAIANILENNKDLIKKI
Ga0208091_10001383	F005879	N/A	MFNEQVFWKDGFEGECQGGIFVRAVDLKKFMELVESEENENGGEVVGLRFHDNNLELIIK
Ga0208091_100013831	F031494	N/A	MQVIVSLHTDIAPHIAELILDGKLEGGYSIDYALNSLVSYLNGKEIVIYNFSKAFWLDNRWSGYKIDDYGTKIVINFIYSKV
Ga0208091_100013839	F025026	N/A	MNDFDFFSVSASSTKITSLMKLPNVKREKIETRVYYGSGKFPKTLYKVNLKFFDVMEFGHFGARERANEYVEGVLASKPDNVILSVKFYPVD