Scaffold Ga0208091_1000049

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000049
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32333
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (65.75%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F004666	Metagenome / Metatranscriptome	428	Y
F008305	Metagenome / Metatranscriptome	335	Y
F008814	Metagenome / Metatranscriptome	327	Y
F020171	Metagenome / Metatranscriptome	225	Y
F028150	Metagenome / Metatranscriptome	192	Y
F038246	Metagenome	166	Y
F038669	Metagenome / Metatranscriptome	165	Y
F047650	Metagenome / Metatranscriptome	149	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100004914	F000473	AGG	MSDKNFFKYGINQWTGEPNKPVFYTEEMKKAVHSIKRPSMLLMDIVKYPDFLALRLYEDNFLQFDGIKKEIVIDYVSKIKKIIESYGVRCELEGKQSANIM
Ga0208091_100004915	F000671	N/A	MEKILCYSCNKSKNNLVVRKSILLPINLFICETCIASKFEPRWVIILSGRQNGLDHIKEYILKKRYIGKEIAATEVIV
Ga0208091_100004921	F008814	N/A	LDKITVLEEIIKEIGEELYQKWYNALAIEDRTEEASKAMAQNSGETAFWVIQTFMSKFNEAAEDLKDK
Ga0208091_100004927	F073565	AGGAG	MSDGKDLTGFNEVKPVTNTSWNGEQYAADPASAFPSTDKSTQDGSGVGNNGK
Ga0208091_100004929	F001280	AGCAGG	MCIECGCESVGSETGIVSAPVIDVSRDGESGLTLDMTSTPEQTRQFINGK
Ga0208091_10000494	F028150	AGAAGG	MNMNWLKKWGFAALNENFTFLGFFVAWVVLEGSAKTVVGYVTIASVALWFLTIGIREKSEKDE
Ga0208091_100004949	F038246	N/A	MFAMSILDNLEIFIEKTEETEKCHYCQNKAKYSDIAKIDEKKYDVVSVCECHSFKGLSS
Ga0208091_100004957	F004666	AGG	MTTKREYLKSKGITVGRRGRFSGAAKVVLAEADKNGMKFTAEVPTKTK
Ga0208091_100004959	F038669	GGAGG	MSYKDTLLEPHLQKLVDLGESGTDIMHGHMKNLMYECETKLLDISELQDNPEYKYFSGRMDTLTEIYIMTYNLAFAISDRSKARG
Ga0208091_100004961	F008305	GAG	MLGYTYKDIQNFGHSLTWAIDTAKNQGDEQNYKQLLIVWDFFEGLLAEGYIDENTYYG
Ga0208091_100004962	F020171	AGGA	MPELFIDTVAEHITGAMQQEIAEQLFEDWSNKNLDEGAEYAEYEFMQYASPELKQEYNKFYSYIEGNEYYLC
Ga0208091_100004963	F000450	GGCGG	MGDRANFGFVQPNGQTIVLYGHWAGHQMLGKLADAVIAARPRWNDSSYATRIAISNIIADQWNMETGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEWADGRDPLNKVRGMNNKALFTMDLTSFCEKYALERLLVV
Ga0208091_100004964	F047650	GGA	MAEDVSPVYYCDSCSVARASYLIKLLDGELAFCTHHYNKSKKALDEKAYEVIELNKKEDLPKLKEMAE
Ga0208091_100004966	F000311	GGA	MYFELTAPDRLSMERAYWDAQIIGLDPVAMSPLTFNIGTGSIEKVSKIRDKYNLIESYTSDYEPTGYTRR