Scaffold Ga0208091_1000026

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000026
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47056
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F070923	Metagenome	122	Y
F072014	Metagenome	121	Y
F078637	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100002621	F034165	GGAGG	MPFTIVLGKDVTISGVANARSVTVSSSASEIDVTKFGDTARKFRRGLIEQTVEVECIDSPGVSAGGTFTLGGTETGDVTYVVTSVAQDQPLDDIITFSVSARRVTGPA
Ga0208091_100002643	F070923	GGAGG	VSDAPAGMLPHLRSRLRDEVGPRAVAAGRAFDEFVDSVCRCWNAEHWTKLARSQPESETAAVKDAKVLIAKVREDVEAMWGDSPELQKLYGDVGTDAVESFARLWFESMANRTWMRQACREARKT
Ga0208091_100002664	F072014	GGCGG	MNYIHLPPPSDVVQSLMDRAWDDDVSDDDRILLETAAKTLEVTLDRCIRLASVIEKTEVG
Ga0208091_100002669	F078637	N/A	MKAEWLTVEFFGGPLDGALRPVQVGTAIYYLANGAVIHAYALDEIHEGHYVRQVMRHYEIIHSSWFA