Scaffold Ga0208091_1000011

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000011
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62322
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (10.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004155	Metagenome	450	Y
F006588	Metagenome / Metatranscriptome	369	Y
F011225	Metagenome / Metatranscriptome	293	Y
F076086	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100001122	F006588	N/A	MATLEELYKTQQSALGVDKISFEAGKAANTPYSTNDLQKADEQVLTAAKFKTGRGGEKTFAKYSDSVKR
Ga0208091_100001132	F004155	N/A	MKSDILLSLIKEVVKNEVKAQVKEEVAKLIKSGAVTLNLPKKSTAPTLKEAIKSVDPFEAATSALQQSRKVVQPQPKPQIKKEFSKDPMINEILNMTQPFSAEQRKEGAQSVGSVLDMIKPELRVDESDWETMDFRESNIPQNIPQQLESTGDGLQDATIKALTRDYSELVKRFK
Ga0208091_100001138	F076086	N/A	MEILLGIIIVLFLTALYIVRNLLTKLEKYEEFIERETQRNQALLEALREIDSREMFEKDDEVGSIFYQIKETIERFKQFN
Ga0208091_100001144	F011225	N/A	MIYDEKIKNLLEAIDGKLRILQNGISGAQNLSPSEAHTTLADARALIERVGELARINR