Scaffold Ga0208091_1000003

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000003
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 126989
• Total Scaffold Genes: 191
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 126 (65.97%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007110	Metagenome / Metatranscriptome	357	Y
F084821	Metagenome	112	Y
F086677	Metagenome / Metatranscriptome	110	Y
F093303	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_1000003116	F086677	AGTAG	MINSDYLIDYSDWFDEGGYCQVYPIKDKKDLVFKEFRNKKKAQESYKYHKKLAKFDLAPKIYSKICKLEFAKEDDLYQPDPSDWGYITELAKTHAANTKISMANIQYLVDEIYNKTGLKFWDCHWYNVGVVKRGRKKKVVCIDTGKESFDGNANAWANPDPGPKCSYCEKYECNCLS
Ga0208091_1000003135	F084821	AGGAG	MKWIDLFQYLNERANDFKNLGKFPWQEEVQAFDFGTLEYYPLDFIQILPDQKISFHMDTSTTGEDNGS
Ga0208091_1000003136	F007110	AGGAG	MNCIYCQDCMDFERYEFLVETGRKMICKDCSVENRAVGFMDWGHKTAPSLVLVPANATETIRKLDRANRRAR
Ga0208091_1000003160	F093303	AGTAG	MSNLTQEQKFVIFWLYNRVAERIPPNPIKGGSDDIILDGINVTETVRELLQERLFV