NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208088_1011127

Scaffold Ga0208088_1011127


Overview

Basic Information
Taxon OID3300020505 Open in IMG/M
Scaffold IDGa0208088_1011127 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1250
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007027Metagenome359Y
F012572Metagenome279N
F064493Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0208088_10111271F064493N/ALSTKDVAPVSDHLWATTPVAQTIEAVKNELGGIYLQGKPECKHGARVWRTGTSAKTGKEWGNYSCIEKSKATQCEPVWYMQTSTGWAPQV
Ga0208088_10111272F012572GAGMRASLVYANLYRLGASSMSSQMELINLKAMTGKLFIDGEMVAEYKVETCDKCARVTQLDKFGYQKNSYENIIWFCKDCR
Ga0208088_10111274F007027GAGMDIIRFECRNCKKITDQLERIVSDNLPPNVKVLQCIKCSKMSVCLLVDYADV

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