Scaffold Ga0208088_1000005

Overview

Basic Information

• Taxon OID: 3300020505
• Scaffold ID: Ga0208088_1000005
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41833
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (19.70%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F004839	Metagenome / Metatranscriptome	421	N
F008078	Metagenome / Metatranscriptome	339	Y
F010541	Metagenome / Metatranscriptome	302	Y
F014956	Metagenome / Metatranscriptome	258	Y
F018511	Metagenome / Metatranscriptome	234	N
F060725	Metagenome	132	N
F100712	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208088_100000519	F014956	GGA	MITIQEFALKVSLSVCPDYVVEPFRLKKWWRDKGARELEKYFFAGYIVNYDQEIDWKAISDHKKQMWYDSQNFQIQAGNEYSKRQG
Ga0208088_10000053	F004839	N/A	MEKNFNNLQFKWTFESISDNIPTIMLLTIVLTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATLVALVEIFFGLQEKYEGGEFITMFLFVGTIIVFGYLLEINFVDKGVEAYGINAPEPKPKRKRKPRVKVEAKENNETTGTAKNFVSSFKTIT
Ga0208088_100000540	F008078	N/A	MTPKEKADELFTHYHNLIQSIGGELGQEILVSILAKQSALFAAREVLKEKWNIEIQGSEDEYYFWEEVEHEIESI
Ga0208088_100000545	F100712	N/A	MLIELQILADDIAQMAIEAVANEWKAQGHNLTGAAIKNMETVIRFQTNELIIEGYVPEYMAINNKGVLATKIPYYPGSGRKESEYIKGLMRYAKQRFGASDKESKSIAFAIASKHKKEGMPTIKSQKHSKTGKRTGFIEEALDKKQAEMSDLINRAITYSIETTVETFYKSILNR
Ga0208088_100000547	F060725	N/A	MIKLFINNQEVDLNQKDVNVTIDYSIENIELGNISGAHSKRNVTLPGTKTNIEIFENIETPNVIVTNAYKLLPARLEANGVPILTGKARLDSGELNAMNHGFKANNYKVALIGNNADWFADVGNILVRSLGWQDITVSTATVKTNYNPLTSEHCFILMKWKAWENETYIVDNELTPAIFIWQILEKAFQNKGYQLNSIFKTDPFSRLIIPMGLNLDADYIKDFVNLRASNPSPSSFVYSSGDYGTVDITFTNETTSPNFDTGGNYSGGVYTVPINALYELIAELNVTLTASIGDLNQFAELILFFEVNGNNVSTYDLTNETSLNDSIALEFLGDLVAGDLVKMRLRYENVTFNLVIGGSFSVVAQKEGLEQGETVNLEYIIPNSWYVKDIIADLTTIFNLAWETDVLSKQVYAYPKDNYTVRYRANASGAITLTTFDGFFKDTNKYDLNTRDIDGSELTILDNYKSSQVLAYATDDDTTNKEEARRGVNIYSGGYNFPEDRFPNGIEFLYTKFFAKAIHINDVAITTGGTYGAQMPLVFGDDYNTVPDAEPNYNLAPRLLYYAGRRSGLDGYVRLYDEASSAASAFDFPAAFMVNYNDPSGGDFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKQYTTFVKWENKDITQLSFRRKGMIGSSNFIIQELEYNPKSNSPARTVILYDEKPNVNDLSKVSNTITLAGAPPQGGTVTGSGSGLVGANGATVNIQLSYTPFLNSNTNVLVLPVNSGITQVSNTNANVLVFQNGQKLIPTIQYIIGGSTIGINIDTHYDGANYEVIVNGVTKG
Ga0208088_100000549	F018511	N/A	MKTDSIWGELGSRIPEEYKAQVIATVNRTYRVLSIDPNDMDYLFNVYNNFVNHYEPERRNCPACRTKVVGKMRQIVQYWNENG
Ga0208088_100000560	F001640	N/A	MRYLFLFLPLFSFAQDVVKDTVYIQKQGNIYYIIQQTTLSDSTVTGSKQILGDSATAIQSLVTDAERQSNTLAIHAKPIITKGKAVQRINYYNDLHVQISGKPVYFTTAQRDTAKFLGDWKLNFNGEIIDGVIELNNNKRLIFNPDNGKVYTISTNLLLSTFTNQITFSFNGVRYDLYKFGNGRFATVENDVRLIKKE
Ga0208088_10000057	F010541	N/A	METTIFAVMYFGNAKRYQDLNYEIEAFTKREAVEKFYEKMRNEDYFPEDEFVYGGLIRDCDGNVIAEPGSETMEYDGGYFYAEPVIQ