Scaffold Ga0208484

Basic Information
Taxon OID	3300020504 Open in IMG/M
Scaffold ID	Ga0208484_1002549 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020504 Open in IMG/M

Scaffold ID

Ga0208484_1002549 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3088
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3088

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008351	Metagenome / Metatranscriptome	334	Y
F013610	Metagenome / Metatranscriptome	269	N
F015585	Metagenome / Metatranscriptome	253	N
F016361	Metagenome / Metatranscriptome	247	Y
F018161	Metagenome / Metatranscriptome	236	N
F080871	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208484_10025492	F015585	N/A	MTKIRLHLYSKRLCIKYRFVKLKEVKMSPKNTERNQRLIKVINHCSRVAESKEVRELQLSPQLGELIKNLAGKGKEWSFVLITYPKRNSEVQGKPPSEIKAEPGLSEEEKFFSSSW
Ga0208484_10025493	F016361	N/A	MCKKRELTKEPLIDGVNRPIGERSIPILMSKQLALMALIDTMTITMDPEKGKKVFQEIVSIMKELKNMEAKCTC
Ga0208484_10025494	F080871	GAG	MSNPQRFSCSRSTIGFNQPKGERLTSSQLWERRNQLTTILIGFINATPNIKGIEVGGEIKRYREFCRIIETIREIDPDYHLVVAPRSEDCLRIMHYDCLCNHSHGCKCALLKKKNLS
Ga0208484_10025496	F008351	N/A	MDSDQETELPEKCSDELVHTVRESVEKLFSLVNTEFSRPSASDEEEDFSLLKQICEAKADILKDNPYWSAFDHTTLLSTKALGRLDWLDAEGPWDGVRNIENYKVFKEALRELRECNPNWKLEEQEVIRRIICSNCGEVKSVPEKETLLESNPAK
Ga0208484_10025497	F018161	N/A	MSELESKPDYSARRQVVRRIYKVLSRINCIPPFEDTINFRHLQRLHELMRELKSLDPEYLVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSDEGKPFPALNSKH
Ga0208484_10025498	F013610	N/A	METSTSTDNPEKKQEIEKQKTLVADLFSTLNLVFTQTKLGIERSDLLFRAVHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVIEDKWDCDTNKFLFNEIKDAMMKLRRFNNYWQLTEEDAI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208484_1002549

Overview

Ecosystem & Geography

Associated Families

Sequences