Scaffold Ga0208484_1000900

Overview

Basic Information

• Taxon OID: 3300020504
• Scaffold ID: Ga0208484_1000900
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6433
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019779	Metagenome / Metatranscriptome	227	N
F026196	Metagenome / Metatranscriptome	198	N
F031758	Metagenome / Metatranscriptome	181	N
F039102	Metagenome / Metatranscriptome	164	N
F040464	Metagenome / Metatranscriptome	161	N
F043229	Metagenome / Metatranscriptome	156	N
F045533	Metagenome / Metatranscriptome	152	N
F096608	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208484_100090011	F045533	N/A	MAEKPEDNILSSDQRPANEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINSNKEWNHEDNIRLFTEVRRDMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK
Ga0208484_10009002	F026196	N/A	MSEPSNSCNNITFSCEKNTIGLNQPNGKYFTSLGLWQRRDKLVEDLINLINATKVNKSGADSIKIQEYSKIQSIIEEQREIDPDWHLVMRQQGGGCLRVSHYDCYCNSGNDSKCSHNTVPLVKPRTLRDVTEIVKSIQETMNAINTNISFDENTGTMMKLYFFIKELRRVEPNRLPCLREVSRNPSKESKA
Ga0208484_10009004	F040464	N/A	MNPTVNPEWLRRGYAFVGQTQEHLKDVLKELTLKMRTMTDKEIERDLRKGLKVTGDITLELSRFVRQGLEQRRTFKGLLGTLIETKNWALIRLILEITEELKERSSSSSLLFSIAKEILRELQRIQAIIPIKELEQMETSLINIQYWRLTRHLRI
Ga0208484_10009005	F096608	N/A	MNPKTELVKEILQVIDTLTPMEIKTIPESVVFKLYQLKKRIKELDPSWEFNDPYNHYIFRILILLDALEVDETFSLEKHGKICQMMHREVRDIRRTNPLWRMDTSLVVEFINSTPLKEEDREREKDKLPEDLVDKKGSSPFKKY
Ga0208484_10009006	F043229	N/A	MTQKGVRVEIETIEECGCEPHECYCRHNKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICELKKKIKRIDPEWILIDEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIDLCQSINKLKIIHPDWEMDLENSKNHYLCRCRSCLEKRKMYQQTLDETSLEKSTPYKGSRNKISN
Ga0208484_10009007	F031758	N/A	MSVNKIQEKELLIKNLFKLINEIFIVKPGITFDEIILQVRNTKKRILEIDPNWKLGNKYFHYVHEVISLIDEVNTLDEMNLEKQRKTFRKILKTTKALRQTDQLWRMNPMIILEFLKWNSKTIMSAEQVSKKPREQVPLD
Ga0208484_10009008	F019779	N/A	MKDHPAIDFRPMDVEGEEDRFSETLDSPDIENEIECSGERCFTPPEDDWEIINRGSDFIIHGLENLDEQLDIIATQIDTENQIEEILKNIRKGFSIIDDIILYATTFINEASEAKVEKFRGFISDLLDFANTNITKTLVIVRKLRARSLLSLVPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRRTIRRRVSRRYSI
Ga0208484_10009009	F039102	N/A	MNKDQEKEKLIRNLFQAVDNIDSTESKETISQAATRIYHLKKEIVKIDPTWRVRDPYNYYVYRILSLLDGIDTRENPNVHNNQELYLKLFHETRMIRKTNQSWRLNVPRLVEFMTETSKVTHPNKIEPMETEEVPKPSSSN