Scaffold Ga0208484_1000672

Overview

Basic Information

• Taxon OID: 3300020504
• Scaffold ID: Ga0208484_1000672
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7641
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066480	Metagenome / Metatranscriptome	126	N
F067430	Metagenome / Metatranscriptome	125	N
F076862	Metagenome / Metatranscriptome	117	N
F086589	Metagenome / Metatranscriptome	110	N
F100357	Metagenome / Metatranscriptome	102	N
F102512	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208484_100067211	F100357	N/A	MDPHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTIAIEKTKETQEMDLDLLEKKTKALHVRLIMKRQTLIAGLKLWYQMPIKIYNEEELLRVRRVIKSVIKLTRRAEEMLKREVIP
Ga0208484_100067213	F086589	N/A	MEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSQNGDGDEIFLSANTDTRHSLNE
Ga0208484_10006724	F102512	N/A	MSVRKLIDEALVTYIRREMCDNIVMLCMEMKTFAEILEKFPVERLQLLRTEVIKVHNQVFGMMEEVKESFLQLV
Ga0208484_10006725	F067430	GAGG	MSTSSTDQTEDNKEKLVESIEAIFGLLTLLDNYCKILIDKGKPDPSKGSIETAKESIVEMAKRVKEVLEIENTKINLTNGKT
Ga0208484_10006727	F076862	N/A	MSNPSHDSTVEEITKGIRTLDTDNQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMAKNLLESNSPRTHTIARQYGRKYPPLTGPLARMLMDLVDLEDLVSCKEIEEMKEVIEDLDNW
Ga0208484_10006728	F066480	N/A	MEIFKERENQVVSKLLFIQGGQPIYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQINVFSKEEKVLQELLKYILERMITCLDTESKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE