Scaffold Ga0208484_1000420

Overview

Basic Information

• Taxon OID: 3300020504
• Scaffold ID: Ga0208484_1000420
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10082
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019600	Metagenome / Metatranscriptome	228	N
F021046	Metagenome / Metatranscriptome	220	N
F026810	Metagenome / Metatranscriptome	196	N
F031767	Metagenome / Metatranscriptome	181	N
F032144	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208484_100042014	F032144	N/A	MDASCPQMNIHEVLFYSFINKECPTFMADKLVMLFRVAMMVFRNGNVSYNAVMICNTLMVDFFCRNHRILARGLGLEFIDNVLFRLARNEGFWHFLNAGNVHLFYLDYRTKMMNLICHQLAKMYGHEHFHNIFRNLSPGMRGRQDLGKVFL
Ga0208484_100042016	F021046	N/A	METNFVTNVHEVVYAGFLAKDCLVNEVRILSKFYKVSLIVFKAGNVSYNAVMAANTIITDFFVSNHRLFAREIALEFVENIMTLLFSYDGFWDFVNRLNIHFFYLTYRSQILQILSYHMSLTYGSEHFTQVYRRLPPYVFGAEDFSQERGKSSNFHM
Ga0208484_10004202	F026810	GAG	MTNEEHVDLFKGGLKMLLNFITTAIDILKDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDICKEGRTPNTLHKLEAYHHHVQYLLSKPNSEWTEDLMKVHIFSINSTEFEKIKEKVNDPELVNKLGVVTNQALVLNPSQVEQSQNSVLDLSLSRQ
Ga0208484_10004204	F031767	GGA	MNNNSINQPKVIVVKRLERKPRQNYVKTLASLKSIIEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKRDVSTNKNS
Ga0208484_10004205	F019600	N/A	MYTPDTDTSKLEVGYNLEKSLKEARETVYEGRKAVEDLTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSIAAYQRYNGDAILTSNLKALNKEILKTTGLVSSSDIEEMKEIIEDLANWKLNEQ