NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208363_1005300

Scaffold Ga0208363_1005300


Overview

Basic Information
Taxon OID3300020503 Open in IMG/M
Scaffold IDGa0208363_1005300 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 03MAY2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1987
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010908Metagenome / Metatranscriptome297Y
F025437Metagenome201N

Sequences

Protein IDFamilyRBSSequence
Ga0208363_10053002F010908GAGGMRQILSPFQKYECFAVDGVDYLVVDYTIVQDKDDNLVEWASKMKFKRLSDHKHYTMPMTKILTNYNEGRAKRCKC
Ga0208363_10053003F025437N/AMRPFEIRQLKVSKEQYFARLGFSDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFEAMEQELNKLNEVVAELSKYKELYLTLKRTFDEF

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