NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208363_1001752

Scaffold Ga0208363_1001752


Overview

Basic Information
Taxon OID3300020503 Open in IMG/M
Scaffold IDGa0208363_1001752 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 03MAY2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4401
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004816Metagenome / Metatranscriptome422Y
F023523Metagenome / Metatranscriptome209N
F051731Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0208363_10017521F004816N/AMKFIKYKQVARITLYGFDDLYRDNNSSVFTEPLNSEYFRNNLNAGVQVGNNAKRMRFQIKGLDNVKLSEHARFCIESLKVPFLYDANNDFKSIGQTIVRMSNLSSINCFDTHGNGQTDPVIFTGQTHVYQQRLGTGTADNIMFQNTEPANVFYNPYPEILYNFPISSNFLNNRYFDFTLIMQFLTGDFIDIPNDQRYFDMFHISFIVYDLDEEELLLTSTQ
Ga0208363_10017523F023523N/AMISEQSLEGWDNNPVKFSNVKYPQTKDENAPKNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKIYYEGQEIPQRIILICSTAHSDSNRVFKSLKNLNWDDDVIEDYNDSLLQDKMEELKYDLDHAKEYKLYKSVYKKFKECKDIDELNDDEMKLLYKFNFVKVQDLEKPKYPDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFITEEQFKNLYDYATEESYNALVIDATKGRPIFKKNFESILKIN
Ga0208363_10017525F051731N/AMMNTFEHNRNILKSINTFNLLEKTRYEAPKDIKQTTFSNPLPKQKYHKIIDNSKMNNPYIGIAHIDYVKKDTPPYYGLHETGSGSISYEDFFKVK
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