Scaffold Ga0208363_1000300

Overview

Basic Information

• Taxon OID: 3300020503
• Scaffold ID: Ga0208363_1000300
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 03MAY2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13259
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F007860	Metagenome / Metatranscriptome	343	Y
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208363_100030013	F007860	AGGAG	MKSNYLAILYFIAGFLTSFSLICQGTEPYINLAGVTLFFYLTFSLTEALEDLGL
Ga0208363_100030018	F009004	N/A	MKTEFNKVIDFLETQQQENKLNTNQLHLIIQTLCTFLDDEQLKEVENLFNQFKK
Ga0208363_100030019	F034772	N/A	MKNLIDYFTPTTEEHKSFLRHFLSTLTMFIVLGGMFYCLMYLKTL
Ga0208363_100030020	F009958	N/A	MENRNLEFWNKGWELTYEFLGWTYSIAGTWEFNDWDEVSEYAFIELEVEISQKWETETDDNLQPHVLGVRLLEDLRLEMQEAINSDLAHYNFWEWKTSNDDSNYTFYHEL
Ga0208363_100030021	F006463	N/A	MTSGTIYDQLDWWQRQWRGTFDLGLYLEVCRIKKNEQIKFKTMKRFKVTFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEK