Scaffold Ga0208363_1000001

Overview

Basic Information

• Taxon OID: 3300020503
• Scaffold ID: Ga0208363_1000001
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 03MAY2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110658
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (11.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002332	Metagenome / Metatranscriptome	569	Y
F003038	Metagenome / Metatranscriptome	511	Y
F103124	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208363_1000001102	F002332	N/A	MATVNQVQKKVKMPKWDVVKFQILTHCYINRVVMSDSDLNCLTLLSFNQPVELTHFCYDASSEEDWIFKSPQTVRNCINKSEKIGLVIKDPNNKKQVMLNPNLKIQTTGTILLDYKLLGYESEENKQPV
Ga0208363_100000142	F003038	N/A	MALSTTDLGTGSGMPKTITPGNHVLKINSITLEDFSFIEGAYHLMLNVETPPIADYEGFMIDKDDESKGRYAGQIGRVKASQYAFADGETKTGVKIQRNRSIMIFLKNLAHTYGADEWFVAQDNKFDTIEDFVKNFSENAPIKDTYLKWCVGGKEYMGKTGYTNYDMYLPKSEGNKYAYGNVENGNIVEYNEAKHLKKLEVVEKKEFGTQEDDFSIPSKNAADFSLD
Ga0208363_100000162	F103124	N/A	MHPGVFKKLMIEAYLAGATVMDCGCYERPTKQEAREWFTNEYGKQDSNEECDCCDEE