Scaffold Ga0208087_1006882

Overview

Basic Information

• Taxon OID: 3300020502
• Scaffold ID: Ga0208087_1006882
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1718
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010669	Metagenome / Metatranscriptome	300	Y
F012769	Metagenome / Metatranscriptome	277	N
F014232	Metagenome / Metatranscriptome	264	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208087_10068821	F010669	N/A	MELELTRMEQSEDDLTDPSDSEDSNMGISETHWPSDPSEIKCRLHAYITHEQEHLIELLNELEPEVQTSSANIIVEKIKRCFRCIDDITEYTTQFLRQARLIEMRDFTGFYYEIENDAKQTIRQALTIVSTLRRGNLFHLAPSVKGLVIELDYIRILVSRKTLEQVEETLEEYGARRTHTLREIEKLFP
Ga0208087_10068822	F012769	N/A	MQFQYPKFKVRELVKDRFDPILKEEYQEGTAIKVFKASIEVIRQSGNRLTEQHYLPYSPEEKEVVIKEVIAQISEWKNRILNRRQKEKITRIDRALSKRILDILAEYLRALEETDIAKRQSKLYHVDAVAAITELQINRKFASPERKPVKRKIH
Ga0208087_10068823	F014232	N/A	MSQEKPEISSEVITKADTSEDCGHEPHGCTCPPSAEYEKSTEIRSLTNLIRLVYSVPLVNGLISYKPLERIWNSKKVIRKIDPGWILADKVTLLEHQVLNQIDTIDISVPWDDIENKSRYLDLYKTIIRLKAIHPNWDMYLEDSKNHHFCKCLSCSEVKRHYQEMLDATSSEESNSE