Scaffold Ga0208087_1005775

Overview

Basic Information

• Taxon OID: 3300020502
• Scaffold ID: Ga0208087_1005775
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1892
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023520	Metagenome / Metatranscriptome	209	N
F027744	Metagenome / Metatranscriptome	193	N
F028416	Metagenome / Metatranscriptome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208087_10057752	F023520	N/A	MTTTKEGKYVKCCDTKSRDKRIESIDDLLSAINLIFIQNMFEEGDDDTALLHHLYKAKLKALSIKPELTLVNETHLLVSKILENVDNIDTSKEWNHQDNKSKFVEIKQVMTKLRLCYPLWKLNKYDIEKYSTCLCPNCDSIDVAGGKTLKKLGELTLEL
Ga0208087_10057753	F028416	GAG	MERQPVNGHAIVTRPERHPNVFRLRRTWLKVAGEALDLLNLIDVTQPNTAADNTLVFGAIFDKVRQLKRIDPDKLVNQDTMVQATVIKYDCPNCLPTDNIYLVDYELDC
Ga0208087_10057754	F027744	N/A	MNSIVRESKNNFYELGVGNTSQRINPELPLTTAERDAVARGVVRFNKQRQHRKGRLDNLLEALDTRHGTVYDPGNVEILIEVFNTVRLIKCAFPDKSIKWELPKHRPLPLAESLEVENALIKSALEKKFFQRVNCEKEKELYFNSLKL