Scaffold Ga0208087

Basic Information
Taxon OID	3300020502 Open in IMG/M
Scaffold ID	Ga0208087_1004062 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020502 Open in IMG/M

Scaffold ID

Ga0208087_1004062 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2320
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2320

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016494	Metagenome / Metatranscriptome	246	N
F024962	Metagenome / Metatranscriptome	203	N
F028417	Metagenome / Metatranscriptome	191	N
F031075	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208087_10040622	F024962	AGAAG	MKILKSIIKEQVENKIDPILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDFPQYEKEDFIKEVELHVFEWKSKVQERSVENITGLDHLLSSKIIDTLEIYLEALEETNIDERQRKLYYTDSFAAVWNHRKIEDIIRHPWSIELCRRNNWIAEMPKDN
Ga0208087_10040623	F031075	N/A	MSQEKSTSVSETANRKENSEDCGHEVNACTCPPDKEYEKYTKIRALTHLIGMINFMPPFDGPISYGPLERIWNFKKQIREIEPNWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTVTKLRTIHPNWQMYLEDSKNHHFCKCYSCSEIKRKYQEELDATSSEELSSEEENGK
Ga0208087_10040624	F016494	N/A	MSQKDNNSEEVTIDNFTELTQLVKSTLQTVDELFPPKPEFSFENMMVQFYTLKSRIKRIDPSWKFENTDTSYVFEILKLLDAVNTEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGIIKFLYPTLNTQIS
Ga0208087_10040625	F028417	GAG	MATNESSDNKNQLITLMLQTIENFVPLETRPAPEGMAIYLYELKKEILRQDPKFKFINSYNDYIFRILTLLDYLDVSKEYDTESHGKTVHMICRETRDIKRIDPLWKINPTSVIEFINSTLSASARK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208087_1004062

Overview

Ecosystem & Geography

Associated Families

Sequences