NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208087_1002616

Scaffold Ga0208087_1002616


Overview

Basic Information
Taxon OID3300020502 Open in IMG/M
Scaffold IDGa0208087_1002616 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2950
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012647Metagenome / Metatranscriptome278N
F015058Metagenome / Metatranscriptome257N
F015181Metagenome / Metatranscriptome256N
F058690Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0208087_10026161F015058N/AKGQGIVISNLVSKCQNKTDKEKEYLKILEFMNSIEVLVHFAEQALVWTTRSQLRPGTQIPAEAVRTLAYNDHESLKQKLGVIAVARASILRERRLAQFHSLSESGDNPVDLCETEKTIVLMKLEARLLQLEHLYKSLLEIKPVELKMFQ
Ga0208087_10026162F015181N/AMNQTLLSKEDVMILDLLKRVKKKENTLIEESKKQDFIREIQLENFSSEKRRFLVKLLVQNTELKLACKEEKGIANYVTEKFFQTKTLDISDEQLLQQEIFTFQQKLGRIAQLKEKVKIDKGEVANELFKTKTSERMSVILKELSTLLYETNIRLSNSGLMYNYIISKLFKLVDNGKPAYQAEAMDWTTTYEEK
Ga0208087_10026163F058690N/AMSLLTKEELEVRLEQIQQEKIDVIRKKQRATEKLSRRGLTREYRATLLDHIKLLITMEEKLHEFEDQCNIMLYHLNHHCKC
Ga0208087_10026166F012647AGGAMEEDKELEHLTFYINEFYAAKNITMDLFLLFRKSEAEIIKRKEAIEFIIRGRISFLTHCKGDETSANYVVASIEHWTNLLKICQTEQVQALRMLNDLYQTYKKVSRAPVSQSTLVKEYVERMDTNDNN
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