NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208087_1002494

Scaffold Ga0208087_1002494


Overview

Basic Information
Taxon OID3300020502 Open in IMG/M
Scaffold IDGa0208087_1002494 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3038
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017959Metagenome / Metatranscriptome237Y
F023523Metagenome / Metatranscriptome209N
F051731Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0208087_10024942F023523N/AMISEQSLEGWDNNPVKFSNVKYPQTKDDNAPKNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKMYYEGIEIPQRIILICSTAHSDSNRVFKSLKNLNWDDDVIEDYNDSLLQDKMEELKSDLDHAKEYKLYKSVYKKFKECKDIDELNDDEMKLLYKFDFVKFQDLEKPKYPDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFITEEQFKNLYDYATEESYNALVIDATKGKPIFKKNFESILNID
Ga0208087_10024944F051731N/AMMNTFEHNRNILKSINTFNLLEKTRYEAPNNMKQTTFSNPLPKQKYHKIIDNSKMNNPYIGIAHIDYVKKDTPPYYGLHETGSKSISYDDFFKVK
Ga0208087_10024945F017959N/ASDLQFRIVRYLMPREFYDSIANTLGNGGVYKLWFPNYSVYTGNPVLATNKNCTTSFSISTKSLDYVIGTFRLPNYDQEGPVLNTRLSPLASLEYGATFGTADNQIDAGLRRVYNQSKYFAHNGDSIKTTQWKIGNTPYEAQDLKEQFNSLLQHFNIHQDTLSGMYPGINSIGAFREHSYASIVSLNIPGESEMYTVSGLDTEQTPATVEWKVVSEAFTANNITTANNCTPYLIAAYNSHLEIKAGRVISLIP
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