Scaffold Ga0208087_1001399

Overview

Basic Information

• Taxon OID: 3300020502
• Scaffold ID: Ga0208087_1001399
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4160
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F016243	Metagenome / Metatranscriptome	248	N
F022593	Metagenome / Metatranscriptome	213	N
F024477	Metagenome / Metatranscriptome	205	Y
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N
F057095	Metagenome / Metatranscriptome	136	N
F073465	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208087_10013991	F024477	N/A	MSYDIIKNSSKASSFELLIKNITLIEKVEDFYKELDQITSYRFNCHGKPDPDIYFMKDIIKIRLMELERLQMQKFNELIENDLNEDL
Ga0208087_100139911	F073465	N/A	MSNWRYRWRRPRPRYRPAPPAPRIEAVPIRSIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIIPHQVDDQGFSELENDSETEPLVSDV
Ga0208087_100139913	F011134	N/A	MSTFAKSEENYDSKETLVDTIKTDLVSQFKMCVDEINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRVEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK
Ga0208087_10013993	F039941	N/A	MDIETLALRLEEIKLSRLEILEEKKVLAEELLDGKLRIELKRSIMENMSLLIQLDLTLNEAEILYENLIECRLIHARYRQQSS
Ga0208087_10013994	F037570	AGTAG	MNIKKLDLLKIRNLKFRASQRQVIIDRILRQKDLEKDLWKVSIKTLIILAKIKFRCEELERISENLEQTVINGY
Ga0208087_10013995	F057095	AGAAG	MKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKCRIQKSKDIVTLEKVAIANKLLIKTLSEEIRNALKEQLALVSKVGSMFTNLSLMYTYIENNDSGLQLEAKSRQWSNEYQET
Ga0208087_10013997	F016243	N/A	MNEAQITKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIEDSKAGFIKRLLEVSDSRKSLKVQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVMYEFLIENCKNE
Ga0208087_10013998	F022593	N/A	MNRQEELKFFRDKVEQIRKYKLANYLAKRDIADILLMEDLEVESRRSLAHNHELLERIDLLLGILEGIGELIIEFKEQEVS