Scaffold Ga0208087

Basic Information
Taxon OID	3300020502 Open in IMG/M
Scaffold ID	Ga0208087_1000650 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020502 Open in IMG/M

Scaffold ID

Ga0208087_1000650 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6301
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6301

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014842	Metagenome / Metatranscriptome	259	N
F038207	Metagenome / Metatranscriptome	166	N
F094975	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208087_10006501	F038207	N/A	MSEVESKKFYEKTSFRVFVFVATIVFIFLIIYFLGYFSSPSKVEIKSPTQAVSYQNNMQKTMDRLKELLLGDNETQEAGKKNEFLEKEIKEIAEKFTMATPSNPSRFERRVKRAAKVGDAVISELLTKIQASVARQEESIEALRVCLKVLLKKGKEGHPSVALIQERVVAHNRESDLCRMLLENVNFLQLKLEGDKGESLFELTNVEIPLQPPNKLFLHSPKEELYYEEPRKMPFV
Ga0208087_10006502	F094975	AGGAG	MQIAPLPNGNLVFEYGTTDPAISIKEFTLMETLLLNYTACYEALNPYVARRRTVHGIQTLILKPESEILASQGQEAHYHYIKTVAAVSLAALIIQDPFFFIPDGFLGSLGFDVDIFVPYLKMPAWITETVVSFQFQAGHNWLLNLKSYEEIMGRVRAGYFHKPSSRRMNPLELVSTGKRQALSQEENQSKRPKGTEIQKSHVFANFQMEVLPTEASASVPKMEVDHTEASPSVSRVVEKKETEEEKETICLP
Ga0208087_10006503	F014842	GGA	VTPVKKPRRKAVAKKGATLKIQTITTAPPVVAAPVIPTPSTSPLSEEDETSQIPALFQNYSLRMLEELEKVKVDRERLLTRENDLLIENRRLATRVRELENLAEIGLVDQILSLAQNYKSGGGGSKIVQEALVAAEVSELDVQTHPAYPSRQPESVVYYVQPQNFYQPPESYRGVRDVMISTSNVVQKRVTNPIPNLSSYQIQNQTHQNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208087_1000650

Overview

Ecosystem & Geography

Associated Families

Sequences