Scaffold Ga0208087

Basic Information
Taxon OID	3300020502 Open in IMG/M
Scaffold ID	Ga0208087_1000638 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6370
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032144	Metagenome / Metatranscriptome	180	N
F033705	Metagenome / Metatranscriptome	176	N
F088320	Metagenome / Metatranscriptome	109	N
F100445	Metagenome / Metatranscriptome	102	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

180

Metagenome / Metatranscriptome

176

Metagenome / Metatranscriptome

109

Metagenome / Metatranscriptome

102

Protein ID	Family	RBS	Sequence
Ga0208087_10006381	F033705	N/A	MEDPVVAIHPLDYLFQGLEAAEVLKLHLVSLIKEEANRLRNLKLKLNSIRKLVEVNQANSRKLVQIFQEDQNIMPLVAKFITILTELDEISACNTISEMIGVLNKITECMLQIQIQLN
Ga0208087_10006382	F100445	N/A	MTPIVNEAQAKLIPLAFDLNNRIWMEGYVLCCSFLENAAQILQIQIMDGQGFETMIEYDVELNTHINQVLNILNKEQSITPDMTVWVMSLLNYMLYLKNIVFNPDPNDLIKFIKPLQIIKLNIKESRVLMEGALTWVDKKMMMQ
Ga0208087_10006383	F088320	AGAAG	MSQVSENRRREIEDSKRKLAESIMMINGLLSLLEGHKRMLSERNQADPSNGKISVAKEAVKIMADKVKEVLDLNELRLEENIVTQ
Ga0208087_10006388	F032144	N/A	MDASCPQMNIHEVLFYSFINKECPTFMADKLVMLFRVAMMVFRNGNVSYNAVMICNTLMVDFFCRNHRILARGLGLEFIDNVLFRLARNEGFWHFLNAGNVHLFYLDYRTKMMNLICHQLAKMYGHEHFHNIFRNLSPGMRGRQDL

Protein ID

Family

RBS

Sequence

Ga0208087_10006381

N/A

MEDPVVAIHPLDYLFQGLEAAEVLKLHLVSLIKEEANRLRNLKLKLNSIRKLVEVNQANSRKLVQIFQEDQNIMPLVAKFITILTELDEISACNTISEMIGVLNKITECMLQIQIQLN

Ga0208087_10006382

N/A

MTPIVNEAQAKLIPLAFDLNNRIWMEGYVLCCSFLENAAQILQIQIMDGQGFETMIEYDVELNTHINQVLNILNKEQSITPDMTVWVMSLLNYMLYLKNIVFNPDPNDLIKFIKPLQIIKLNIKESRVLMEGALTWVDKKMMMQ

Ga0208087_10006383

AGAAG

MSQVSENRRREIEDSKRKLAESIMMINGLLSLLEGHKRMLSERNQADPSNGKISVAKEAVKIMADKVKEVLDLNELRLEENIVTQ

Ga0208087_10006388

N/A

MDASCPQMNIHEVLFYSFINKECPTFMADKLVMLFRVAMMVFRNGNVSYNAVMICNTLMVDFFCRNHRILARGLGLEFIDNVLFRLARNEGFWHFLNAGNVHLFYLDYRTKMMNLICHQLAKMYGHEHFHNIFRNLSPGMRGRQDL

NMPFamsDB