Scaffold Ga0208087_1000534

Overview

Basic Information

• Taxon OID: 3300020502
• Scaffold ID: Ga0208087_1000534
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6970
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045530	Metagenome / Metatranscriptome	152	Y
F061527	Metagenome / Metatranscriptome	131	N
F066480	Metagenome / Metatranscriptome	126	N
F067430	Metagenome / Metatranscriptome	125	N
F075720	Metagenome / Metatranscriptome	118	N
F076862	Metagenome / Metatranscriptome	117	N
F086589	Metagenome / Metatranscriptome	110	N
F100357	Metagenome / Metatranscriptome	102	N
F102512	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208087_100053410	F100357	N/A	MDSHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTIAIEKTKETQEMDLDLLEKKTKALHVRLIIKRQTLIAGLKLWYQMPIKIYNEEELLRVRRVIKSVIKLTRRAEEMLKREVIP
Ga0208087_100053411	F045530	N/A	MINSITEKLEFLNNMEEFYQKVQEMLHYLGIKSPSRPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMVQMNKTGLIKMYKSKEQIRKVYNTAITEEETHKYVDEEGPPRKRFSGIYTRFN
Ga0208087_100053412	F086589	N/A	MEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSQNGDGDEIFLSANTDTRHSLNEISQNSQNGDGDEIFLSANTDTRHSLNEISQNTQK
Ga0208087_10005343	F102512	N/A	MSVRKLIDEALVTYIRREMCDNIVMLCTEMKTFAEILEKFPVERLQLLRTEVIKVHNQVFGMMEEVKESFLQLV
Ga0208087_10005344	F067430	N/A	MSTSSTDQTKDNKEKLVESIEAIFGLLTLLDNYCKILIDKGKPDPSKGSIETAKESIVEMAKRVKEVLEIENTKINLTNGKT
Ga0208087_10005346	F076862	N/A	MSNPSHDSTVEEITKGIRTLDTDNQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMAKNLLESNSPRTHTIARQYGRKYPPLTGPLARMLMDLADLEDLVSCKEIEEMKEVIEDLDNW
Ga0208087_10005347	F066480	N/A	MDIFKERENQVVSKLLFIQGGQPIYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQINVFSKEEEVLQELLKYILERMMTCLDTENKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE
Ga0208087_10005348	F061527	N/A	MSDYFEQAFSEILSAIKRLTIKIGTAIRIEQQRVPADPNIRTVHHYHTIIRTKINQLSSRAAIMSIKTDQYCLIKVYGTLLIMVDRTLGESNPKSKYVQLKLLHRMLEDFENNSTFSYWKDHVILGDRAVRETDG
Ga0208087_10005349	F075720	GAG	MVNQEDRNFKLFIGGLEMVLGLTKTAITILEYNLSGIVGLFFGIEQWSIVISFYITAHERSLVRHKDTVTEQGAKLANHLTIPLIKNMETLRDMCREGRSVETLNKLKAFENHLIYLIQKPRDQWAQWQLKEHIYSVIESEFPKIIQKLQSSILDHSWELINGICPSLLS