Scaffold Ga0208087_1000278

Overview

Basic Information

• Taxon OID: 3300020502
• Scaffold ID: Ga0208087_1000278
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9930
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (28.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029090	Metagenome / Metatranscriptome	189	N
F029723	Metagenome / Metatranscriptome	187	N
F032529	Metagenome / Metatranscriptome	179	N
F036545	Metagenome / Metatranscriptome	169	N
F058098	Metagenome / Metatranscriptome	135	N
F058685	Metagenome / Metatranscriptome	134	Y
F059665	Metagenome / Metatranscriptome	133	N
F061798	Metagenome / Metatranscriptome	131	N
F075668	Metagenome / Metatranscriptome	118	N
F104447	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208087_10002781	F036545	N/A	MYGCFKNIPVRVPAYSYKMSNTTDETLKHFLKNERKEKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDITQDWDSDFNLEQFKKLQERMTFFKHLHPNWRLGPREVAEYSNCTCELCYQVRHPMKKDDLEEIKSLTIS
Ga0208087_100027813	F058098	N/A	MSPFRKKVDRIILTPTVRKIIFNMSERRQFQIINKETTLLYGAVKLLAENNFKAVIDDIDTNCKELNQTNIQMYQKLNETLSCLKEIDPEWKIAAETRETFVPVVLIECLREGVSLIDTSDLEDLNFGIYNLVHQILGRIREFDPTWSINSSMRFEALK
Ga0208087_10002782	F029723	N/A	MTSYDSSNDRQKVLMTPMQLSVYWRKVAAEALKLLNDIHLDEDHDSEDNLSAYKLFHEQLRELKRIDPVRPFNQITMGPTHPIVTSSCNCTLCDPSSEDIDSEDSTESVLI
Ga0208087_10002783	F061798	GAG	MAEGRFIDLKSQDIKHIDEILLRYVSPNNRDSARRDLITRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSEIGNPSEGKTDS
Ga0208087_10002784	F032529	N/A	MAESRRLIDVTDTERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGNSEEQIRRRALAWEKLYEIRQVPVKVDTSCEVTSSTDTTSKNEAKK
Ga0208087_10002785	F029090	N/A	MKQKSKVATFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKANVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLKKGYTKNFKWFKKLKNNLKFVYGRSPKWALHYQESALPDLGNLTENDFN
Ga0208087_10002786	F104447	AGGA	MTSTKTGYLCTTIHQLRLKNEFCDIINSIAVKKDFDSNARQYVRIHEILQEVKTINPDWRLTACAKYSWK
Ga0208087_10002787	F075668	N/A	MSYEYSVNDVRCLVMYTLNKVDTQKDFCENLRVFSGLYIAIMAFKIYEPNKQFELEKGPLLCEQNHSSFYNSRSNKSCRKINRLNQFYE
Ga0208087_10002788	F059665	N/A	MSEEKENSKPRFSVRNRIRPSRGRWSDNDLLLFVQSLLNSVNTEENFQVNISVMEELFEAIKDFRERRPNWYFILEKIPAGSREDIGND
Ga0208087_10002789	F058685	AGGA	MKGRELKSYPCARFNCNQMIKKNRPKRKILLNPGVKSVRALIKNKCITRLAKQRSIIKNKKLNLLIKPCTTSRKSNSNPNGSSINQRVVVNYPFIPVRLHFLSKKSREWIKLASPMKAIKPSIATKLNILINKNVLANQITYLISLASYNMKVKSFIPDKLSVLINNSTLGDQITQSKVNYPFIPVEYIATNKSNIMKEKSILRIDRSTPVGAYSFQKRIQGTQIPVFPIPARTILW