Scaffold Ga0208087_1000249

Overview

Basic Information

• Taxon OID: 3300020502
• Scaffold ID: Ga0208087_1000249
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10402
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 20
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Associated Families: 20

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019779	Metagenome / Metatranscriptome	227	N
F026798	Metagenome / Metatranscriptome	196	N
F031758	Metagenome / Metatranscriptome	181	N
F038078	Metagenome / Metatranscriptome	166	N
F039102	Metagenome / Metatranscriptome	164	N
F041008	Metagenome / Metatranscriptome	160	N
F043229	Metagenome / Metatranscriptome	156	N
F043767	Metagenome / Metatranscriptome	155	N
F045533	Metagenome / Metatranscriptome	152	N
F045559	Metagenome / Metatranscriptome	152	N
F046173	Metagenome / Metatranscriptome	151	N
F047014	Metagenome / Metatranscriptome	150	Y
F054566	Metagenome / Metatranscriptome	139	N
F055421	Metagenome / Metatranscriptome	138	N
F057099	Metagenome / Metatranscriptome	136	N
F062460	Metagenome / Metatranscriptome	130	N
F069678	Metagenome / Metatranscriptome	123	N
F073069	Metagenome / Metatranscriptome	120	N
F085120	Metagenome / Metatranscriptome	111	Y
F093242	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208087_10002491	F047014	GAG	MSFQVNEARDQWIRYLINSTEVWGKIIEAKKGKEAEHYCARIVNIIQKLKKLDQQWHLKNSVSERNSIPIQYNNQSSNHTLQGA
Ga0208087_100024910	F069678	N/A	MSNQEQLAEGTSSTETLVNTVKTELIYKLKLCIDEINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPRWSINGTRRNLDKPIKSRNIGLPTNSSESESENERPDDRTMTGTAHAYR
Ga0208087_100024911	F093242	N/A	MEYSNPEKDKIMNIIQDSMNRIDTNTNYNYNYENFLRIYAAMRKLKTKEPGLKFKVSKIPTNEDNHFFKKRNEN
Ga0208087_100024913	F057099	N/A	MKILRKDWELISKIAWNFLNLKLEDSKKTINLESSIDAFKLLGILNTPVFVHILISSLCRTINLIRPETREMDIVRIANRALLIMREIKKRRPNWKFQFCPNNLANSKETLKKQKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKIPELPDLIEYK
Ga0208087_100024915	F085120	N/A	MKNQVRIIQLLNRLEKMLKIEIEKARTDQDNDAIKLLEKLYKLTKKTKVNYSTQKH
Ga0208087_100024917	F026798	N/A	MDKSKEKLIFHNCTEESPKSKRGNNVNINKVIDENNQLTAIEKLALRRGIERVNRRRDSQQAKIIKLVNSLNDKQNFQDMNNQLKLQILFNTVLKLKRVYPSKSAMWKAPNNNTLPPYKSVRLENKLLKRGLRKKCSSYPNKEKIIENWYKLMKVQESP
Ga0208087_100024918	F043767	N/A	MENQEQGQSNGHSLFFSRHPSEANAYRRKRLWREKALEALDLLNHIKLEEMATSEHNIQVYEAIRERLKMLKTIDPERKIHQDTLVETTVIKYDCPMCLPTDDSNYEIELDS
Ga0208087_100024919	F038078	N/A	MAAKGDKCTVRMKKSKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKARVLANSEYWSLVDYIGMTIGRIFRCIDTINVEEKWDSKNNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYSTTCPCSQCSTKENREDTISSSISKLNI
Ga0208087_10002492	F073069	N/A	MTSKDTVIAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFLERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLNKITNSIAKIAKEKVEVANKQLNKDMSKETRSILKENFILMYEINIKLVDLKLMYEYIITKMISAEITEGMLTEARMRKWTRFY
Ga0208087_100024920	F045533	N/A	MAEKPEDNILSSDQRPANEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINSNKEWNHEDNIKLFTEVRRDMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK
Ga0208087_100024921	F045559	N/A	MDLTPENIKQTTQASELRKDVAKENYKYVKLTGISNVINSLHSTDFSNEPLMHDRMNRVHILKWKIKNVDPNWHLTDQVTLMEHQILDLLDGIDHMKPWNEIGNKLKYLALFSIIENLKKIHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPETERLDESS
Ga0208087_100024922	F039102	N/A	MNKDQEKEKLIRNLFQAVDNIDSTESKETISQAATRIYHLKKEIVKVDPTWRVRDPYNYYVYRILSLLDGIDTRENPNVHNNQELYLKLFHETRMIRKTNQSWRLNVPRLVEFMTETSKVTHPNKIEPMETEEVPKPSSSN
Ga0208087_100024923	F019779	N/A	MKDHPAIDFRPMDVEGEEDRFSETLDSPDIENEIECSGERCFTPPEDDWEIINRGSDFIIHGLETLDEQLDIIATRIDTENKIEEILKNIRKGFSIIDDIILYATTFINEASEAKVEKFRGFISDLLDFANTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRRTIRRRVSRRYSI
Ga0208087_100024924	F031758	N/A	MSVNKSQEKELLIKNLFKLINEIFIVKPGITFDEIILQVRNTKKRILEIDPNWKLGNKYFHYVHEVISLIDEVNTLDEMNLEKQRKTFRKILKTTKALRQTDQLWRMNPMIILEFLKWNSKTIMSAEQVSKKPREQVPLD
Ga0208087_100024925	F043229	N/A	MTQKGVKLEIETIEECGCEPHECYCRRNIEYKKSMKIRNLTTMIGLIEADAPLSFRALERICELKKKIKRIDPEWILIDEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIDLCQSINKLKIIHPDWEMDLENSKNHYLCRCRSCLEERRMYQQTLDEISLEKSTPYKGSRNKISN
Ga0208087_10002493	F046173	GAG	MLSLKDREIYEIVIVEIENYKSSDHDKMSKRINYAAKSPALDTILNNIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSVGVQLYIKEIDTFYKEKLIGRLDKLKDTIRSDIPIKISEIQETHQRIRKDQDKLNKMKQDPQYNNMQQWGIQLSLERVMEIDSKLINLTKLLNYITEKQKEQE
Ga0208087_10002494	F041008	N/A	MPIKNEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVENVMEHLFEYYLTSEYSQKLRIPLKGAKPVTNDRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTVERELRVVGDYNMVTLYKIDNELLNLKMMYEYLIENFNSHVVTKG
Ga0208087_10002495	F054566	AGG	MEKEKNKAELTLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGIIITKEKPIKVKQTNKDAN
Ga0208087_10002496	F055421	N/A	MEEFTNPYKEINIEIHLVWIAIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRSLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVILLHFMTVAICLPSGEEIESNLIKLTIGY
Ga0208087_10002499	F062460	N/A	MNLEESIIEAVTTAVKEIRQESCIKKQVKSLMKIYDAIIVKDNETSTESSLKTTRKRKRSISHE