Scaffold Ga0208084_1002557

Overview

Basic Information

• Taxon OID: 3300020499
• Scaffold ID: Ga0208084_1002557
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2945
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F012013	Metagenome / Metatranscriptome	284	Y
F015988	Metagenome / Metatranscriptome	250	Y
F050377	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208084_10025573	F050377	AGGA	MTNSTTTREYLKAQGITVGKRGRFSAAAKNAIQEASKKGVVFTDTKNVK
Ga0208084_10025575	F012013	AGGA	MAELDLQEATRRDDIYNELNQIVDKITTIPVFPSLLWVWTFDVMRNIYENNQYDDLAENDYVDEAVPSGITLKQIFDKFWEDVDGIGLSMDLGDEIIEETLRDWMRDNDFLVALDEDEWLDD
Ga0208084_10025577	F015988	AGGAG	MESEYINRKTKIVEYIKLHVISLEQDLENIASEMEELDPESKACKELDFEYNHWSGQLLATRHILSVVEDIL
Ga0208084_10025578	F000868	AGGCGG	MDKGSFLENENQMVIDAEMQTIAEQLLDDWITTNLDEGTLYSDWRIADMSDSNYLKGRFNLFYDLKPEDDYYIEWDEEK