Scaffold Ga0208084

Basic Information
Taxon OID	3300020499 Open in IMG/M
Scaffold ID	Ga0208084_1000926 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020499 Open in IMG/M

Scaffold ID

Ga0208084_1000926 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6096
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (62.96%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6096

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (62.96%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F001881	Metagenome / Metatranscriptome	622	Y
F014121	Metagenome / Metatranscriptome	265	Y
F017818	Metagenome / Metatranscriptome	238	Y
F018913	Metagenome / Metatranscriptome	232	Y
F041726	Metagenome / Metatranscriptome	159	Y
F074911	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208084_100092616	F001881	AGGAG	MKAVWDCRNNQGADTEEKLVSAILQVAAETVKFYNAQNDMIVLDKQDLLQLAQEIVE
Ga0208084_100092620	F000919	GGAGG	MRFRNIEFRWSTCNKKYELIRWYKAEVDGCEEREYCYVVAFFDKDKECYNMRTVGDRFFEDKDAWVVGKYGLEFLNAIFEIEKVEEELK
Ga0208084_100092621	F017818	GAGG	MNKDAYYDWIAENDTYPEHSHKWIVGLYNKYEGVEGLHRYFGVFETKEEAKEFAAEYREKYTKPGFISRTKIFPMCEVVK
Ga0208084_100092624	F018913	AGGA	MTTNKERAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSGQNPVDFKDELNVMYVLGYDDCLKDIDGICDELELL
Ga0208084_100092626	F014121	GGAG	MMTNTASQIWETFKAELIVEPTDDMKEALASSIRVISSLIHRDGVLSNEPWLTHTAQELNEIADDVEAL
Ga0208084_100092627	F074911	GGAGG	MILDEELLKLVKEYFEEDWDENDGWEYSGNFDAFVKFAQEIYDKAYDDGCFDNY
Ga0208084_10009264	F041726	N/A	MKNYRMVIEYWVPDENENVFEERMIRSRSSCGKIVDDCLAQDRTNLIRSVEVTPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208084_1000926

Overview

Ecosystem & Geography

Associated Families

Sequences