Scaffold Ga0208084_1000258

Overview

Basic Information

• Taxon OID: 3300020499
• Scaffold ID: Ga0208084_1000258
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13575
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (45.45%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040599	Metagenome / Metatranscriptome	161	Y
F048106	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208084_100025819	F040599	GGAG	MAKGTIYEHREPTEIELAWITGIWEGEGSWSYKKGRTRTFANGKTYTEKNYLSMSMSMTDQDIMERVAVIMDGRKITYTDGGPVHKAAGQKPTYYINLQGEAATRWTELMKPYLGKRRREKYEMIMEKLNAN
Ga0208084_10002582	F048106	N/A	MKDLQLFLNNILDIFTTKKSNQNDVFNDFIKYFYFTLDKEIKSNKSDLLKNKYIKIRKNGLNYIIANKTAIMANICKKKIK