Scaffold Ga0208050_1011964

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1011964
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 958
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017987	Metagenome	237	Y
F043890	Metagenome / Metatranscriptome	155	Y
F074791	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10119641	F074791	N/A	MHSEKLVIAMSIDTYGLSSEQYEEFFHKNIRAAAKLYLDTCNILSSEGVGNVDFKTVSEMYQEAVYTTNDDCRRY
Ga0208050_10119642	F043890	N/A	MQNTSSLGILNPDSINKLQIECIEEEDDSMTIHIEWDETDPDLQWWTDLGPEGQETFMINALREACDCYVD
Ga0208050_10119644	F017987	N/A	YRELLCKRTEVRNALPSGTPDKCVAWWYAPPQDHISEGKFVLLHTKSGAQAPLTHWRTYKPNEVFNQSHAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ