Scaffold Ga0208050_1010123

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1010123
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1067
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F018353	Metagenome	235	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10101231	F018353	AGG	MSKPKAKKQTIELPDVMATELVRIINTAHEDGKLITGFVACLELFDGKKKTIKIVANQDMPQHSVFGIINYAAEKYQFTMSPEEDDDDFYDPEWFDG
Ga0208050_10101233	F028786	AGAAG	MQSFNHKQFSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKTKTK
Ga0208050_10101234	F001805	N/A	MAKTETIKIQDGDTVIELTGTDKEAFLEQRAKDQAEASLLEAEYKAKQDARDSAIKKLGEIAGLTKEELDAIL