Scaffold Ga0208050_1006858

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1006858
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1360
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000980	Metagenome / Metatranscriptome	814	Y
F007470	Metagenome / Metatranscriptome	350	Y
F042890	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10068581	F042890	AGGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHQMLANLAEAVIKAQGRWSDPSYATRITI
Ga0208050_10068583	F007470	GGAG	MDYQDGFEDGVKFTREVIIANIRVWAEKSEDGAAYDDIADRLEFGTVDYDI
Ga0208050_10068584	F000311	GAGG	MYFELTAPDRLSMEMAYWDAQMIGLDPTALSPLTFNIGTGSIEKVSRIRDKYNLTESYVSDYEPTGYTGR
Ga0208050_10068585	F000980	N/A	VCTGDCDALIEYTIKDGFGWPAGEMNLTCRCNSNCTLLSVEDATIPYTDTPLPTKEEKMETTENVVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNGVLNGKIDAVKEIICEAYADSQDQDTLREIAEALSIELIKEVEWTASIEVSGTYSYNILENDYDLDLESEITDAIFAESNNGNIEIGDQEVCNVREA