Scaffold Ga0208050_1005812

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1005812
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1495
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F002302	Metagenome	573	Y
F015865	Metagenome / Metatranscriptome	251	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10058121	F002302	N/A	MSYTDLFNEAIDDVTATLTAVSGLRVVNDPTKLAPNCVYLDAPNFTTFAGNGNIVRLEFPIKVIGSGPAGLPVLRSILSIVASVLNSSIIVMAGRPSSLEI
Ga0208050_10058122	F001326	AGGCGG	MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVAGVDATFNGTYSVRALPQYLFLGIDTQGDLLYDYQVPIADQVLYAKTASDVERVAASGTVANDPVCTWVTAAQVMSYLGITITNPSDDYTLLTQSVSAGNQFCYRRRQESSYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA
Ga0208050_10058123	F015865	N/A	NDLMGEYMIASDNLAADNLLAAANSSGVWDGTPEDFLKSVYDAANDVSSGRNWMPTHMFVSVDVWAQLGQLVDSSKRPLFPFIGAGLTGQNALGNASATSWNGNPIGLQLVVDSNFAAKTMIITRVGQGQGDAFEFYESIRGLMSVEQPSVLGRQFSFHGYVSTFAAIGGMIRKITQA