Basic Information | |
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Taxon OID | 3300020498 Open in IMG/M |
Scaffold ID | Ga0208050_1002996 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2203 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010746 | Metagenome / Metatranscriptome | 299 | Y |
F016115 | Metagenome / Metatranscriptome | 249 | Y |
F020860 | Metagenome / Metatranscriptome | 221 | N |
F035200 | Metagenome / Metatranscriptome | 172 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208050_10029963 | F020860 | AGTAG | MEITKAKKLKEGGYALYGIDPKTKTETQVGYIGEGLTLEAWLPKGVKIENS |
Ga0208050_10029964 | F016115 | AGGA | MVGRDGDVAIYKKQLDDPESENYHYEVVAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGFTCVSREDADKRFVQLQEKLSAYVATATLPNGEKRGRGRPRKIDLTKTELVVS |
Ga0208050_10029965 | F010746 | N/A | MTYKCAVSGEAIPPERVEALQVLGVPETLWTKKEYSQTRKLKAVYAGDDGSNDIVICDAVDGGNLFENSIVAEVENE |
Ga0208050_10029966 | F035200 | GGAGG | MNNKFIVLRDGVRVSEDMHPSETSAEVEANYWREIIKRWPDGTKVVVKKIGG |
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