Scaffold Ga0208050_1002625

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1002625
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2389
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ralstonia phage RP13 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039506	Metagenome / Metatranscriptome	163	N
F046908	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10026253	F039506	N/A	MKYVKLIAKPDTWFKAGTEAFDDDEYGKRITLESYNKWLKSGSILVRGIRVCEHDYELKLGYKLGEERIDGELCGIDEFDMTIVDDEKDIPWPKPLDPPTTTAEAEARQRRFEDNIRYIQ
Ga0208050_10026257	F046908	GGA	MNEEEFDIKDDRRTYYYNIFGKMEPDYESMVAYLLDEGVLFVTSAIDRCTQKECLGLYILINDYFVPASDAESITYNELPKLYELYKEKQWDGV