Basic Information | |
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Taxon OID | 3300020498 Open in IMG/M |
Scaffold ID | Ga0208050_1002437 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2497 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009954 | Metagenome / Metatranscriptome | 310 | Y |
F016152 | Metagenome / Metatranscriptome | 249 | Y |
F064417 | Metagenome / Metatranscriptome | 128 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208050_10024376 | F009954 | AGAAGG | MDGLHIKVKTTDGFEGTLSLRPRSIVSFEQKFGKGFAKLLSEDQKLEHIYFLAWSALKDSGKVVKPWGDSFLDTLDSVELVVDPNLESTETA |
Ga0208050_10024377 | F016152 | N/A | MISVESGLSPNDLLDAPDGVLEAIVIYLKERNKGND |
Ga0208050_10024378 | F064417 | AGGA | MSKDAIVLVGVKDTLKALESFDKQAVKEFTKVINSELKNAKQDAQGFVAGDPPLSGWSTQPPKKPRSRGGAGWPAWDQSVIKVGISATKAEGKVRRDYTTSAGALKN |
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