Scaffold Ga0208050_1001990

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1001990
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2802
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F028166	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10019904	F001176	GAG	MSDNGTGMDTPPNSQPSGAVTSQEATRKNPSQGKFRSGFSGPRPATKIDTNKHGIRRETILGQKKTKPKKV
Ga0208050_10019905	F001280	AGCAG	MYHLRMVQDSATTVSNMCVECGCEALGSETGIANIPGGILDVSRDGEAGLTLNMTATPEQRENFINE
Ga0208050_10019906	F028166	AGGAG	MSDGLNLTGFNEVKDSGSNNLNLNPTGTEPAAAFPAKDVSSQDGAGLGNNGK