Scaffold Ga0208050_1001313

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1001313
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3548
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043902	Metagenome / Metatranscriptome	155	Y
F085623	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10013134	F043902	AGGAG	MTVQQLRNNGYKVRVLHCRLYNGYHTWQNGGHEYIQRNAPVDPDSKGGSTQVIIDSPDGKHFRGLAMCSKKDNYNKKMGVRIALGRSGVII
Ga0208050_10013137	F085623	N/A	VTKLRTIILEFDLIEVHYNKKLKNKPYLVRVFNYNNSDPHELRLNEDDLKNLYNILKEYKYL