Scaffold Ga0208050_1001215

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1001215
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3688
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018350	Metagenome / Metatranscriptome	235	Y
F074416	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10012152	F018350	GGAGG	LDILSNMTFKDIINKYPIVNTDWECNHNHIIGSMSHRIMAVTGIDSYNGMKQFHQYLGITGYFSRIRKDDGSGVIFNRDPWMREFKMYYTRGGMKNGIYECTRIDGVNGGNDVYIMVTSVEGSRVWCMDVFER
Ga0208050_10012153	F074416	N/A	CGLTKDNVLYGKTVNLSKMYDNMLSDVREFLFGGEFVSMIDMVEYDINISKFVNAYISKKYGISIRCVYNKINGNTSRNATMSVDILYNELKVKYGITAIDWMYLYNNMNFHTNDVDILEYVANKILGNDFYNYFVTEYNIRTVGVVKKVHNSIKVEWNNGGSKEIHLSRFVKSYNRWWTMTTGKKDKNRGDIKDYDKLLNGRSVTEVFPVYCPVFSNLRMNYTGIDFDNGKNNIKKCSEIAGYSDKGETWSFASIDRIDSNKGYSYDNIRIISHYANHLKNVGNIEQMRRLVRYMDKQNSYF