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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020498 Open in IMG/M |
| Scaffold ID | Ga0208050_1000861 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4462 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000980 | Metagenome / Metatranscriptome | 814 | Y |
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F002207 | Metagenome / Metatranscriptome | 583 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208050_100086110 | F002207 | AGGA | MPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISTMGFPTKIEQVSYSNPVFSFHNIHSYKDDGITDEEYACQPSRGDIDIQNDPDWFRKSVEFAKTQKDWYSWNNSNWGTK |
| Ga0208050_10008615 | F000980 | N/A | MSVGACIILDMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTSCILLSVEDATIPYTDTPLTKEETMEESTPAVTVPDTYNPNALVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKQNAVLQDKINTAKDIIAEAYPDSQDQDTLRSIAEALGIELTRTVEWTATIEVSGTIELDLLEDYDIEDEITDNLYVDSQSGRIEIGDQEVCHVREC |
| Ga0208050_10008616 | F000311 | GGA | MYFELTAPDRLSLEMAYWDAQITGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLKESYWSDRESTGYKER |
| Ga0208050_10008617 | F001043 | AGGAG | MSDYKDGFQDGYKFAREELMEKLAEIDIADIDSWILDRLAEMIEGNQL |
| Ga0208050_10008619 | F001125 | AGGCGG | MGDRANFGFKDRKGDTIFLYGHWAGHRMLENLANAVEQARPRWSDESYATRICVSQLVNEEWASETGWGLSVNELSDNEHKVPVINWANKTFTLMEEDLQTEVFSQSLDAFVSKYSSQPSMV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |