Scaffold Ga0208050_1000752

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000752
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4864
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015591	Metagenome / Metatranscriptome	253	N
F030424	Metagenome	185	N
F048951	Metagenome / Metatranscriptome	147	N
F064670	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10007522	F048951	AGGAGG	MADKRINKGYNYPASALLKEFPDDMWASTIGERLGVGRAAIQTWREGNTYLDQWRADKYACLLGKHPSEIWSNWFDEVELAS
Ga0208050_10007523	F015591	N/A	MSNYEDPIAEFIEASAEGLCTGYVVIANIERINGDQSFWVTTLRNQTASTSLGLLESASAAEKYRIARSFNNRYDEDDE
Ga0208050_10007527	F064670	AGGAGG	MSPMILSDKVAGIIKDLEVQVGIKDIALSSAMRRIEELKNQVEELVVEVAELQERLGEG
Ga0208050_10007529	F030424	AGGAGG	MIDVNQFAELELRVNDLQNALARVIEERDNYKDTADSLFRELESCRTTLTQANSDISRLRVYLAQGAEL