Scaffold Ga0208050_1000690

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000690
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5118
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F003658	Metagenome	474	Y
F020863	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100069011	F003658	N/A	MLDLRGKPILTCICGCKMFVVTVMWDEETREVGWYDLKQECKECGAISTAPTPIDWRDDA
Ga0208050_10006903	F020863	AGGAG	MQTKMEDLHRLVAVLEELVKPLLEGEPIEATYESNKRPHLVLQEGSKTYGRAFRIFFSGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRSLISGIRTGLMIAERGNE
Ga0208050_10006904	F001507	GAGG	VNATETKPYTVEQLLNEIYEDNYSHLEFEWNMGGEPCECKICLTMQTIIKYRGE