Scaffold Ga0208050_1000605

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000605
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5527
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F009318	Metagenome / Metatranscriptome	319	Y
F011215	Metagenome / Metatranscriptome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100060511	F009318	N/A	MARLLLLLLLTACTNDRPWKVIEVRAKGDACEYVLSRSNGFGPQIKTLTDSCGAYKLFQTLNL
Ga0208050_10006052	F011215	N/A	MNLLEQMNAAEYKKLLEFKEQYPTIGLDLVKALTEKTLPIQLTLSECIDLSNAIGNPYGLYCNRIFDAFKSKP
Ga0208050_10006053	F001981	N/A	MTYPTLITIPKSDICKAEIVQIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFQAFGAEITLKEGSLTPNYDEDPIYADIKAQLKAREELLKIAFRQAGKTAIFDESTGEQVPVCTAKATKASIAVSFR