NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000474

Scaffold Ga0208050_1000474


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000474 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6413
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002317Metagenome / Metatranscriptome571Y
F002867Metagenome / Metatranscriptome524Y
F003805Metagenome / Metatranscriptome467Y
F004722Metagenome426Y
F006109Metagenome381Y
F017122Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_100047412F002867N/AMSIVSTTDYGNGYSLDQLENERGELYYRACKGSICRYAEDHYIAMMYLEGMGWDPKQQAP
Ga0208050_100047413F002317N/AMEHHEEVHAAAPQPPNLINQAVPALLATAVIGLGGLFIQVAKLDQSVSTVAADIQELKNDSKERLSDLETRVRHIEMTVGSKK
Ga0208050_10004743F004722N/AMSPARTGRELVLEWLNREIRAAKTADLQRAAAFLEWARDIRKGCAKQRGGARVAQANAWRKRVDDDVRW
Ga0208050_10004745F006109AGTAGMTRYVVMVEDRWVTAVYDSGKGIGFTRSKEDASSWVTYERAVAAARTVAQSCNCNAAVHCVDEPAYPQSWK
Ga0208050_10004746F017122N/AMEVVPFQEQQDPDLRLGEGRSRTSSEKAQLFELKIWLPGQGAMRDLVRAESLQQAIQFAQNRYPNCKVEVPTAAAKKPKLARAKNGPRETARRRLKLVEKRNEPADR
Ga0208050_10004748F003805AGGMRPIEHSAESSFHKAATDQWLVNLFNKQDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLADQFGMDRDSA
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