Scaffold Ga0208050_1000402

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000402
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7187
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F021513	Metagenome / Metatranscriptome	218	Y
F022403	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10004021	F003805	N/A	VHQSPPQVAMNPIEHSLESQFNKASTDKWLVDRFNSGDYRGLLEAALILNTLHQLEQTKSRWAIREAANNLTERFGLNRDSA
Ga0208050_100040213	F021513	N/A	MNMHILSEHQFQLITQALDEARAALTQCQHVELDLTKPKQTVPLPAGEKITRKAQSQSKTRGSSRGRRGVSSLTEGKVLEIKRQLATGGKSVAKIATEFGVHTTTINNIKFGRTWKSVALQQTAESMG
Ga0208050_10004023	F006109	N/A	VTRYVVMTGDRWVTAVYGPGNGVGFTQTKEDASSWVTYECAVAAAKVVMRQVDTPVFVHSVEEPAFPRSWN
Ga0208050_10004024	F022403	AGGAG	MPLRHGQKVYCQLLLDMHRYKLAEELAAREGKKVTGMLREMVYAALEKNLPASDYKAAEAADKASWAESVQRRVQGRMRSKQQPGVSETDA
Ga0208050_10004025	F004722	AGGAG	VCGSVDHASLRVGLMSRSRTGRELVMEWLQREIRLAKTADLQRAAAFLEWARAVRKGCSKQRGGARVAQSNAWRKRVDEDVRW