Scaffold Ga0208050_1000352

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000352
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7804
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005740	Metagenome / Metatranscriptome	391	N
F012111	Metagenome	283	N
F100999	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10003524	F005740	GAG	MKLIVQDIRSTIARAIGVCVDDARVYEYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAIADCCGVGTVRNQWFEFQETGYGLLNGNQVCVGKQLVDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGVWIDGEKLTLALPYTQSTKKFTTLTGVIREATNTASRLYEYDATTLLELDLAVYDPDETLPQYRRSYLADRCNNEEDKPVTVMAKMRHINATNVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0208050_10003526	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNANFRQGFVSCRPGFVQKDYDLCVTITADNDQITADQTNVTADGWSEDCYGPQSLTGTFQCALPYIADDGRTFILMLISGKVWLYNCLQNNAQSLTTSADLENPSNLLDGWMVQAENFVVIQDGFSRPLIFNGTSLRRASDDEIKTGKVMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGSRSAITINGDVFYRAVDGVRSFIIARRSFTDWGNTPISSEMLNVIENDQTNLLWASSAVVFDNRLLMTCQPRYNAEGVIHKALAVLDFDLITSMRKKFPPAWSGIWTGLDVLQIVKTENAYGDQCFCIARGSNDSIQIWEVTKADKFDNNIPDGKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDSLEGDVSFSVTYRPDQYPGWIEWTDFSECATTTQCFDLCPIQNFKPQYRPKMRFPTPSDAPCNETISTPARNLYEVQVAMNIIGYCRIKSLRVHAYDIQEPSVGDCRTVFPACTPISACDINPLTYTSESVNP
Ga0208050_10003528	F100999	AGG	MAEQASEHPLIQHKYGIRSPVKIPDLELELYAFRNRLQPNEGGLGTFDHFVNATKMLWPKMSWNPWLEAQVESLCEHDYVGWAGCGASGKTFGATLFATVWWLANPSKTTVVLTS