Scaffold Ga0208050_1000347

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000347
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7862
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006543	Metagenome / Metatranscriptome	370	Y
F008236	Metagenome / Metatranscriptome	336	Y
F012108	Metagenome / Metatranscriptome	283	Y
F053106	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10003471	F008236	N/A	YASVHNDNDMNEAKAQGFKLFAWCDSDEKIAKKRPKRKAAAEVWRKSLPKLVVLNDTKFITCPEIRRGRGVVTCTPTEGSVDCNLCVKGLANVLFPSH
Ga0208050_10003473	F053106	GGAG	MAKYYVKSGTLEVILSQPNALEAAICGLLLTNKFDIIDEHFYVDEQGYRDYISATPKTNVIATKSIVRAAGWELSREDDE
Ga0208050_10003475	F012108	AGG	MINISLTVRETMWILSKIESYDTIYDKIALAFEDALKVNRNKTVTITGGMTLDNRIYCIKAIRTHTGWGLKEAKDWSDVLVGGWKYDTFVPATPGTKNSVTLSTPEAAENLLRDLVDKGCEGFLS
Ga0208050_10003476	F006543	GGAGG	MQKFAFIVDVVAGELDREGVAESIRACLSETLPDDVHASVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAANPKKAKKELVEA