Scaffold Ga0208050_1000306

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000306
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8384
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F014486	Metagenome / Metatranscriptome	262	Y
F032162	Metagenome / Metatranscriptome	180	N
F043789	Metagenome / Metatranscriptome	155	Y
F086551	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100030612	F014486	AGGA	MGDVKMNIEKLLNENLESFYPWSDNDNPPLDTNKSFVQKQREIDEVFEGWRASM
Ga0208050_10003062	F043789	N/A	MKKLSKYEQLIANLNKAAQDLKDASTQAVATLEAHAEKIEAINQKYSEK
Ga0208050_100030620	F007359	N/A	MKLTKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNDFAYFWITLEKLERVMFKYVMNGITDKLGKKFRGAKGGLKAVAMNRIKNTIDNIPTENFVRTAQVEDIYSLGTISAEKLDTDS
Ga0208050_10003063	F032162	AGG	MKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVKKALVKVALHTLVNKINAKGRKGGLLDLATTKAQSIIDEMTQTCFLWGASSSEGYSLGTISAEKPSDYCGAVSNGRD
Ga0208050_10003067	F086551	AGGA	MNIQINPELYENKNIYRYGHDKLLVKIFPSTIGWKTKTATAEILEGEDKGKWTTIYLRKGLYPVDAQ