NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000294

Scaffold Ga0208050_1000294


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000294 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8749
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006018Metagenome / Metatranscriptome383Y
F007859Metagenome / Metatranscriptome343Y
F009135Metagenome / Metatranscriptome322Y
F010081Metagenome / Metatranscriptome308Y
F024047Metagenome / Metatranscriptome207N
F042296Metagenome / Metatranscriptome158Y
F072270Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0208050_10002941F006018N/ADFYQTCTNNSVNIFYKTKHKFEPFLDGTVCLSYSSGKNSKDYPDNCYPNVLKKIYEYQS
Ga0208050_100029411F009135N/AMNKPKYYLTVNLPPNFDAVDAEAIKTDLMTYINSKNQYGAMYGPKSHKKGITIDKVIYRTNED
Ga0208050_100029413F042296N/AMKLFKSIIKWTGVIVYAGFLATVAYAATMPEPIKLYVIYTYKFNERVIEKIYIKKENAQKYCDLYKDSHNYTFEELTISE
Ga0208050_100029414F007859N/AMKNLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHYINNKYITYSMVEISTNNVYTAHTNYYRAYYNCDGKIIKTTPNN
Ga0208050_100029415F010081N/AMKEQIDSIIKKHCLKMQEVDNTKSIPMVVKELDGIVYTMYRELYGLRDIRADNYYLNSFTADNKKGHCC
Ga0208050_10002942F072270N/AMSINLDVKFVELQQVPTMKLEKIPLNKFLSHLTNISPLEYLIELLPKCTENGPWIAGGCLHRTYRKLPLTNADVDVFFKNKEQFEQFVSAISLTSLFSGYTIESTIYSEWHCTLTIKYMDVDWKIQCVTFKYFDNIEELFKSFDINVCRIAYDGTNVIYGENILNEINSNKLKFNEGSIYYPSVTLKRLVKYVKMGYDIEDVDLKLLTHAFYKSKKKQIDILDQDLLTKKPIQTYEGLK
Ga0208050_10002949F024047N/AMTNVKKSDIVDWLKNVVEKKMVKELNVPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLVI

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