Scaffold Ga0208050_1000294

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000294
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8749
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006018	Metagenome / Metatranscriptome	383	Y
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F024047	Metagenome / Metatranscriptome	207	N
F042296	Metagenome / Metatranscriptome	158	Y
F072270	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10002941	F006018	N/A	DFYQTCTNNSVNIFYKTKHKFEPFLDGTVCLSYSSGKNSKDYPDNCYPNVLKKIYEYQS
Ga0208050_100029411	F009135	N/A	MNKPKYYLTVNLPPNFDAVDAEAIKTDLMTYINSKNQYGAMYGPKSHKKGITIDKVIYRTNED
Ga0208050_100029413	F042296	N/A	MKLFKSIIKWTGVIVYAGFLATVAYAATMPEPIKLYVIYTYKFNERVIEKIYIKKENAQKYCDLYKDSHNYTFEELTISE
Ga0208050_100029414	F007859	N/A	MKNLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHYINNKYITYSMVEISTNNVYTAHTNYYRAYYNCDGKIIKTTPNN
Ga0208050_100029415	F010081	N/A	MKEQIDSIIKKHCLKMQEVDNTKSIPMVVKELDGIVYTMYRELYGLRDIRADNYYLNSFTADNKKGHCC
Ga0208050_10002942	F072270	N/A	MSINLDVKFVELQQVPTMKLEKIPLNKFLSHLTNISPLEYLIELLPKCTENGPWIAGGCLHRTYRKLPLTNADVDVFFKNKEQFEQFVSAISLTSLFSGYTIESTIYSEWHCTLTIKYMDVDWKIQCVTFKYFDNIEELFKSFDINVCRIAYDGTNVIYGENILNEINSNKLKFNEGSIYYPSVTLKRLVKYVKMGYDIEDVDLKLLTHAFYKSKKKQIDILDQDLLTKKPIQTYEGLK
Ga0208050_10002949	F024047	N/A	MTNVKKSDIVDWLKNVVEKKMVKELNVPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLVI